Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs62158282 | chr2:67537344 | A/T | 1.65E-7 | 508 | 37.33 | 37.73 | 2.03 | KM Plot |
KIRC | rs62158289 | chr2:67562021 | T/C | 2.75E-7 | 504 | 37.35 | 37.35 | 2.03 | KM Plot |
KIRC | rs62195305 | chr2:231771474 | G/A | 1.33E-5 | 502 | 37.77 | 28.17 | 13.13 | KM Plot |
KIRC | rs62215185 | chr21:47601022 | G/A | 0.000127 | 500 | 37.67 | 31.07 | 3.33 | KM Plot |
KIRC | rs62215186 | chr21:47601064 | A/G | 0.000127 | 500 | 37.67 | 31.07 | 3.33 | KM Plot |
KIRC | rs62215187 | chr21:47601345 | G/A | 0.000127 | 500 | 37.67 | 31.07 | 3.33 | KM Plot |
KIRC | rs62323884 | chr4:123050910 | T/G | 2.15E-11 | 508 | 36.87 | 48.83 | 1.97 | KM Plot |
KIRC | rs628635 | chr3:124364920 | A/G | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
KIRC | rs629075 | chr3:124364827 | C/T | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
KIRC | rs629455 | chr3:124364784 | C/G | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
KIRC | rs629999 | chr3:124364624 | G/A | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
KIRC | rs6434401 | chr2:191469192 | A/G | 0.000124 | 509 | 40.57 | 28.45 | 29.23 | KM Plot |
KIRC | rs6483541 | chr11:18866999 | C/T | 4.81E-11 | 509 | 37.6 | 37.03 | 8.2 | KM Plot |
KIRC | rs6552879 | chr4:186322637 | A/C | 6.15E-7 | 509 | 3.53 | 37.77 | 37.03 | KM Plot |
KIRC | rs6552880 | chr4:186323593 | C/T | 5.84E-7 | 509 | 3.53 | 37.77 | 37.18 | KM Plot |